parabricks¶
Description¶
NVIDIA's Clara Parabricks brings next generation sequencing to GPUs, accelerating an array of gold-standard tooling such as BWA-MEM, GATK4, Google's DeepVariant, and many more. Users can achieve a 30-60x acceleration and 99.99% accuracy for variant calling when comparing against CPU-only BWA-GATK4 pipelines, meaning a single server can process up to 60 whole genomes per day. These tools can be easily integrated into current pipelines with drop-in replacement commands to quickly bring speed and data-center scale to a range of applications including germline, somatic and RNA workflows.
NGC Catalog¶
https://catalog.ngc.nvidia.com/orgs/nvidia/teams/clara/containers/clara-parabricks
Available Versions on RCAC Clusters¶
| Cluster | Versions |
|---|---|
| ANVIL | 4.0.0-1 |
| GILBRETH | 4.0.0-1, 4.4.0-1 |
| SCHOLAR | 4.0.0-1 |
Module¶
You can load the container module by:
Note for using parabricks
Run module spider parabricks beforehand to check available versions and any prerequisite modules.